I am thinking carefully using a flat razor to scrape the silicone to remove the cover. Then to patch the holes is to get two pieces of 5"×5"x1/4" glass cut and put one on the bottom and one on the inside of the tank with aquarium silicone. On the closest edge of the hole to the existing silicon it will give approximately 3/4" to use as a sealing area.
Does everyone thing that will create a lasting bond that won't leak in the future? Are two plates overkill? Will taking some sandpaper to the glass make a better seal or not? Are all aquarium sealants basically the same or is there one that is better then the rest?
Thanks in advance.
Attached is a photo for a better reference.

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